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Computational Biology and Bioinformatics

ISEF category COMP · difficulty for high-school students: medium

Applying computational and statistical methods to biological data: genomics, proteomics, phylogenetics, structural biology, systems biology, drug discovery algorithms.

How it's judged

ISEF scores 100 points across five criteria:

  • Creative Ability: 30 pts
  • Scientific Thought: 30 pts
  • Thoroughness: 15 pts
  • Skill: 15 pts
  • Clarity: 10 pts

What wins

  • Novel algorithm for genome assembly, variant calling, or sequence alignment
  • Machine learning model predicting protein function from sequence with novel features
  • Phylogenetic analysis revealing unexpected evolutionary relationships
  • Network analysis of protein-protein interaction graphs identifying hub genes in disease
  • Single-cell RNA-seq re-analysis of public data with novel clustering or trajectory approach

Common mistakes

  • Training ML models on same-distribution test sets (data leakage)
  • Using BLAST without understanding E-value thresholds
  • Not validating computational predictions with wet-lab or literature data
  • Ignoring batch effects in multi-dataset genomics analysis

What you'll need

Laptop with Python/R/Bioconductor. High-memory tasks may require free cloud compute (Google Colab, AWS Educate). No wet lab required.

Ethics & approvals

Human-subjects (IRB) approval is usually not required for this category. Vertebrate-animal (IACUC) approval is usually not required.

The novelty bar

A new algorithm, a new biological question answered with existing tools, or a novel dataset combination. Applying a standard pipeline to a new organism is borderline — you need a novel biological insight too.

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Computational Biology and Bioinformatics — ISEF Category Guide: Projects, Judging & How to Win · Finalia